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2020 – today
- 2026
[i11]Lingfei Qian, Mauro Giuffrè, Yan Wang, Huan He, Qianqian Xie, Xuguang Ai, Xeuqing Peng, Fan Ma, Ruey-Ling Weng, Donald Wright, Adan Wang, Qingyu Chen, Vipina Kuttichi Keloth, Hua Xu:
EHRNavigator: A Multi-Agent System for Patient-Level Clinical Question Answering over Heterogeneous Electronic Health Records. CoRR abs/2601.10020 (2026)- [i10]Anran Li, Yuanyuan Chen, Wenjun Long, Yu Yin, Yan Hu, Hyunjae Kim, Weipeng Zhou, Yujia Zhou, Hongyi Peng, Yang Ren, Xuguang Ai, Zhenyue Qin, Ming Hu, Xiaoxiao Li, Han Yu, Yih-Chung Tham, Lucila Ohno-Machado, Hua Xu, Qingyu Chen:
A Federated and Parameter-Efficient Framework for Large Language Model Training in Medicine. CoRR abs/2601.22124 (2026) - 2025
- [c4]Hongyu Chen, Lingfei Qian, Xing He, Aokun Chen, Yu Huang, Qinling Gou, Yuxuan Wang, Yan Wang, Xuguang Ai, Yujia Zhou, Inessa Cohen, Qingyu Chen, Hua Xu, Jiang Bian:
Clinical Trial Eligibility Criteria Decomposition and Parsing with Large Language Models. MedInfo 2025: 688-692 - [c3]Shashank Gupta, Xuguang Ai, Yuhang Jiang, Ramakanth Kavuluru:
Comparison of Pipelines, Seq2seq Models, and LLMs for Rare Disease Information Extraction. NLDB (1) 2025: 49-63 - [i9]Sahana Srinivasan, Xuguang Ai, Minjie Zou, Ke Zou
, Hyunjae Kim, Thaddaeus Wai Soon Lo, Krithi Pushpanathan, Yiming Kong, Anran Li, Maxwell B. Singer, Kai Jin, Fares Antaki, Ziyou Chen, Dianbo Liu, Ron A. Adelman, Qingyu Chen, Yih Chung Tham:
Can OpenAI o1 Reason Well in Ophthalmology? A 6,990-Question Head-to-Head Evaluation Study. CoRR abs/2501.13949 (2025) - [i8]Aviv Brokman, Xuguang Ai, Yuhang Jiang, Shashank Gupta, Ramakanth Kavuluru:
A Benchmark for End-to-End Zero-Shot Biomedical Relation Extraction with LLMs: Experiments with OpenAI Models. CoRR abs/2504.04083 (2025) - [i7]Minjie Zou, Sahana Srinivasan, Thaddaeus Wai Soon Lo, Ke Zou, Gabriel Dawei Yang, Xuguang Ai, Hyunjae Kim, Maxwell B. Singer, Fares Antaki, Kelvin Li, Robert Chang, Marcus Tan, David Ziyou Chen, Dianbo Liu, Qingyu Chen, Yih Chung Tham:
Benchmarking Next-Generation Reasoning-Focused Large Language Models in Ophthalmology: A Head-to-Head Evaluation on 5,888 Items. CoRR abs/2504.11186 (2025) - [i6]Sahana Srinivasan, Xuguang Ai, Thaddaeus Wai Soon Lo, Aidan Gilson, Minjie Zou, Ke Zou, Hyunjae Kim, Mingjia Yang, Krithi Pushpanathan, Samantha Min Er Yew, Wan Ting Loke, Jocelyn Hui Lin Goh, Yibing Chen, Yiming Kong, Emily Yuelei Fu, Michelle Ongyong Hui, Kristen Nwanyanwu, Amisha D. Dave, Kelvin Zhenghao Li, Chen-Hsin Sun, Mark A. Chia, Gabriel Dawei Yang, Wendy Meihua Wong, David Ziyou Chen, Dianbo Liu, Maxwell B. Singer, Fares Antaki, Luciano V. Del Priore, Jost B. Jonas, Ron A. Adelman, Qingyu Chen, Yih-Chung Tham:
BEnchmarking LLMs for Ophthalmology (BELO) for Ophthalmological Knowledge and Reasoning. CoRR abs/2507.15717 (2025) - [i5]Anran Li, Lingfei Qian, Mengmeng Du, Yu Yin, Yan Hu, Zihao Sun, Yihang Fu, Erica Stutz, Xuguang Ai, Qianqian Xie, Rui Zhu, Jimin Huang, Yifan Yang, Siru Liu, Yih-Chung Tham, Lucila Ohno-Machado, Hyunghoon Cho, Zhiyong Lu, Hua Xu, Qingyu Chen:
Memorization in Large Language Models in Medicine: Prevalence, Characteristics, and Implications. CoRR abs/2509.08604 (2025) - 2024
- [c2]Vimig Socrates, Thomas Huang, Xuguang Ai, Soraya Fereydooni, Qingyu Chen, R. Andrew Taylor, David Chartash:
Yale at "Discharge Me!": Evaluating Constrained Generation of Discharge Summaries with Unstructured and Structured Information. BioNLP@ACL 2024: 724-730 - [i4]Aidan Gilson, Xuguang Ai, Thilaka Arunachalam, Ziyou Chen, Ki Xiong Cheong, Amisha D. Dave, Cameron Duic, Mercy Kibe, Annette Kaminaka, Minali Prasad, Fares Siddig, Maxwell B. Singer, Wendy Wong, Qiao Jin, Tiarnan D. L. Keenan, Xia Hu, Emily Y. Chew, Zhiyong Lu, Hua Xu, Ron A. Adelman, Yih-Chung Tham, Qingyu Chen:
Enhancing Large Language Models with Domain-specific Retrieval Augment Generation: A Case Study on Long-form Consumer Health Question Answering in Ophthalmology. CoRR abs/2409.13902 (2024) - [i3]Aidan Gilson, Xuguang Ai, Qianqian Xie, Sahana Srinivasan, Krithi Pushpanathan, Maxwell B. Singer, Jimin Huang, Hyunjae Kim, Erping Long, Peixing Wan, Luciano V. Del Priore, Lucila Ohno-Machado, Hua Xu, Dianbo Liu, Ron A. Adelman, Yih-Chung Tham, Qingyu Chen:
Language Enhanced Model for Eye (LEME): An Open-Source Ophthalmology-Specific Large Language Model. CoRR abs/2410.03740 (2024) - 2023
- [c1]Xuguang Ai, Ramakanth Kavuluru:
End-to-End Models for Chemical-Protein Interaction Extraction: Better Tokenization and Span-Based Pipeline Strategies. ICHI 2023: 610-618 - [i2]Xuguang Ai, Ramakanth Kavuluru:
End-to-End Models for Chemical-Protein Interaction Extraction: Better Tokenization and Span-Based Pipeline Strategies. CoRR abs/2304.01344 (2023) - [i1]Shashank Gupta, Xuguang Ai, Ramakanth Kavuluru:
Comparison of pipeline, sequence-to-sequence, and GPT models for end-to-end relation extraction: experiments with the rare disease use-case. CoRR abs/2311.13729 (2023)
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