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2020 – today
- 2026
[j4]Weiqi Zhai, Rongze Jiang
, Xiaodi Huang, Junyi Bian, Shanfeng Zhu:
Investigation of synonym expansion and self-alignment pretraining for enhancing Human Phenotype Ontology concept recognition. Artif. Intell. Medicine 171: 103282 (2026)- [j3]Yuxuan Liu, Junyi Bian, Weiqi Zhai, Jiaxuan Zheng, Yuyi Zhang, Shanfeng Zhu:
Vaner2: towards more general biomedical named entity recognition using multi-task large language model encoders. Health Inf. Sci. Syst. 14(1): 4 (2026) - [i4]Xiang Zheng, Weiqi Zhai, Wei Wang, Boyu Yang, Wenbo Li, Ruixiang Luo, Haoxiang Sun, Yucheng Wang, Zhengze Li, Meng Wang, Yuetian Du, Guojie Lin, Yaxuan Wang, Xiaoxiao Xu, Yanhu Mo, Xuan Ren, Hu Wei, Bing Zhao:
Unmasking Reasoning Processes: A Process-aware Benchmark for Evaluating Structural Mathematical Reasoning in LLMs. CoRR abs/2602.00564 (2026) - 2025
- [j2]Weiqi Zhai, Yongjun Deng, Xiaodi Huang, Shaojun Wang, Shanfeng Zhu:
MultiFusion2HPO: A Multimodal Deep Learning Approach for Enhancing Human Protein-Phenotype Association Prediction. IEEE Trans. Comput. Biol. Bioinform. 22(6): 2964-2974 (2025) - [c3]Shaojun Wang, Hancheng Liu, Weiqi Zhai, Shanfeng Zhu:
DualGOFiller: A Dual-Channel Graph Neural Network with Contrastive Learning for Enhancing Function Prediction in Partially Annotated Proteins. RECOMB 2025: 49-67 - [i3]Hu Wei, Ze Xu, Boyu Yang, Linlin Miao, Weiqi Zhai, Yihan Li, Zixuan Li, Zhijun Wang, Boya Wang, Jianwei Yu, Jialing Yuan, Xiaoyue Zhang, Cheng He, Minglei Chen, Zifan Zhang, Qianhui Li, Wei Wang, Xiang Xu:
SKYLENAGE Technical Report: Mathematical Reasoning and Contest-Innovation Benchmarks for Multi-Level Math Evaluation. CoRR abs/2510.01241 (2025) - 2024
- [c2]Junyi Bian, Rongze Jiang, Weiqi Zhai, Tianyang Huang, Xiaodi Huang, Hong Zhou, Shanfeng Zhu:
DMNER: Biomedical Named Entity Recognition by Detection and Matching. BIBM 2024: 872-878 - [c1]Junyi Bian, Weiqi Zhai, Xiaodi Huang, Jiaxuan Zheng, Shanfeng Zhu:
VANER: Leveraging Large Language Model for Versatile and Adaptive Biomedical Named Entity Recognition. ECAI 2024: 1583-1590 - [i2]Junyi Bian, Weiqi Zhai, Xiaodi Huang, Jiaxuan Zheng, Shanfeng Zhu:
VANER: Leveraging Large Language Model for Versatile and Adaptive Biomedical Named Entity Recognition. CoRR abs/2404.17835 (2024) - 2023
- [j1]Weiqi Zhai, Xiaodi Huang, Nan Shen, Shanfeng Zhu:
Phen2Disease: a phenotype-driven model for disease and gene prioritization by bidirectional maximum matching semantic similarities. Briefings Bioinform. 24(4) (2023) - [i1]Junyi Bian, Rongze Jiang, Weiqi Zhai, Tianyang Huang, Hong Zhou, Shanfeng Zhu:
Biomedical Entity Recognition by Detection and Matching. CoRR abs/2306.15736 (2023)
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