RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

RNA-seq analysis pipeline for detection of gene-fusions

GATK RNA-Seq Variant Calling in Nextflow

A comprehensive cancer DNA/RNA analysis and reporting pipeline

nextNEOpi: a comprehensive pipeline for computational neoantigen prediction

NeoFlow: a proteogenomics pipeline for neoantigen discovery

SCHOOL is a collection of genomics analysis workflows that are used for detecting single nucleotide variants (SNVs), insertions/deletions (indels), copy number variants (CNVs) and translocations fr…

Repo for Paper: Transcriptomics of Ivermectin Response in Caenorhabditis elegans

Nextflow workflow to run chemwalker tool (https://github.com/computational-chemical-biology/ChemWalker)