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Commits on Dec 12, 2025

• Merge remote-tracking branch 'remotes/origin/master'

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• r1290: support ds in Python

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Commits on Oct 5, 2025

• convert unmapped reads in sam2paf (#1324)

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Commits on Sep 9, 2025

• upgrade arm64-linux to v3

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• add an alert about phishing

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Commits on Jun 15, 2025

• Release minimap2-2.30 (r1287)

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Commits on Jun 4, 2025

• added one more example

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Commits on May 26, 2025

• r1285: better --spsc support

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Commits on May 18, 2025

• exoneval may skip terminal exons in aa mode

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Commits on Apr 18, 2025

• Release minimap2-2.29 (r1283)

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• drafted the release notes

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• r1281: with --write-junc, ignore aln with low mapQ

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Commits on Apr 17, 2025

• r1280: heuristic to avoid aligning full introns

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• r1278: reduced --min-dp-len to 20 for splice:sr

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Commits on Apr 15, 2025

• r1277: don't apply rescored filtering with -P

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Commits on Apr 14, 2025

• r1276: skip unnecessary reverse spliced alignment

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Commits on Apr 13, 2025

• documented 2-pass in README

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• r1275: renamed --jump-pass1 to --pass1

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• r1274: a little better pass-1

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• r1273: reading pass1 junctions works

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• r1272: support pass-1 junction processing

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Commits on Apr 11, 2025

• r1271: code refactoring in prep for 2-pass

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• r1270: fixed ts tag for PE reads

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• r1269: added --write-junc

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Commits on Apr 8, 2025

• r1268: avoid extra small introns

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Commits on Apr 7, 2025

• r1267: penalize introns without signals

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• r1266: fine tune mapq for short RNA-seq reads

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• r1265: prefer spliced alignment

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• r1264: added --jump-min-match, default to 3

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• r1263: ~5-10% performance improvement

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Commits on Apr 6, 2025

• fixed minor grammar issues

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• r1261: code clean up; renamed --jump-bed to -j

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• document --jump-bed

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• r1259: --jump-bed now functional

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• r1258: update blen, mlen and dp_max0

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