pythseq
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Autocycler Public
Forked from rrwick/AutocyclerA tool for generating consensus long-read assemblies for bacterial genomes
Rust GNU General Public License v3.0 UpdatedJan 8, 2025 -
lovis4u Public
Forked from art-egorov/lovis4uBioinformatics tool for Locus Visualisation
Python Do What The F*ck You Want To Public License UpdatedJan 4, 2025 -
ViWrap Public
Forked from AnantharamanLab/ViWrapA wrapper to identify, bin, classify, and predict host-viral relationship for viruses
Python UpdatedDec 27, 2024 -
janitor Public
Forked from sfirke/janitorsimple tools for data cleaning in R
R Other UpdatedDec 23, 2024 -
EnteroEco Public
Forked from microfundiv-lab/EnteroEcoRepository for microbiome project investigating Enterobacteriaceae landscape across the world
R MIT License UpdatedDec 21, 2024 -
Micromix Public
Forked from BarquistLab/MicromixVue GNU General Public License v3.0 UpdatedDec 16, 2024 -
Adj-16S-___- Public
Forked from kyoung-su/Adj-16SEnhancement of Gut Microbial Diversity and Functional Profiling
Python UpdatedDec 4, 2024 -
ThinkPython Public
Forked from AllenDowney/ThinkPythonJupyter notebooks and other resources for Think Python by Allen Downey, published by O'Reilly Media.
Jupyter Notebook UpdatedDec 3, 2024 -
the-book-of-secret-knowledge Public
Forked from trimstray/the-book-of-secret-knowledgeA collection of inspiring lists, manuals, cheatsheets, blogs, hacks, one-liners, cli/web tools and more.
MIT License UpdatedNov 19, 2024 -
MicroFinder Public
Forked from sanger-tol/MicroFinderorder a FASTA file by microchromosome specific genes
Ruby MIT License UpdatedOct 9, 2024 -
MachineLearningDemos Public
Forked from GeostatsGuy/MachineLearningDemoswell-documented demonstration Python Jupyter workflows for many common machine learning workflows
Jupyter Notebook Creative Commons Attribution Share Alike 4.0 International UpdatedSep 30, 2024 -
training_marbl_verkko Public
Forked from marbl/trainingGenome Assembly 102
Shell UpdatedSep 26, 2024 -
inkscaping-graphs Public
Forked from thebgacademy/inkscaping-graphsTheBGAcademy 2024: Making graphs with Inkscape
MIT License UpdatedSep 26, 2024 -
scRNAseq_ChronicMastitis_MilkBlood Public
Forked from SwiVi/scRNAseq_ChronicMastitis_MilkBloodCode to support work analyzing the single-cell landscape in milk and blood of cattle with chronic mastitis by Wiarda et al.
R UpdatedSep 13, 2024 -
VCF_filter Public
Forked from Omar-Abd-Elwahab/VariantTransformerJupyter Notebook UpdatedAug 20, 2024 -
colora Public
Forked from LiaOb21/coloraA snakemake workflow for de novo genome assembly. It produces chromosome-scale primary/phased assemblies complete with organelles (mitochondrion and/or chloroplast). It automatically assesses the q…
Python MIT License UpdatedAug 14, 2024 -
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enrichment-analysis-training Public
Forked from sib-swiss/enrichment-analysis-trainingCourse material for Enrichment analysis course by SIB
Other UpdatedJun 27, 2024 -
tidyxl Public
Forked from nacnudus/tidyxlRead untidy Excel files in R https://nacnudus.github.io/tidyxl/
C++ Other UpdatedJun 13, 2024 -
KSA001 Public
Forked from bio-ontology-research-group/KSA001Telomere-2-Telomere Genome from Saudi Arabia
Common Workflow Language Other UpdatedJun 2, 2024 -
Two-Eel-or-not-two-Eel Public
Forked from samcrow93/Two-Eel-or-not-two-EelShell UpdatedMay 28, 2024 -
depth_vs_polishing_analysis Public
Forked from gbouras13/depth_vs_polishing_analysisRepository to hold code and data for the How low can you go? Short-read polishing of Oxford Nanopore bacterial genome assemblies manuscript
Python MIT License UpdatedMay 12, 2024 -
aso_screen_ghosh_et_al_2023 Public
Forked from BarquistLab/aso_screen_ghosh_et_al_2023Screened different antisense oligomer (ASO) types for transcriptomic response
HTML MIT License UpdatedMay 8, 2024 -
Barragan_and_Latorre_et_al_2024 Public
Forked from YuSugihara/Barragan_and_Latorre_et_al_2024Python UpdatedMay 4, 2024 -
phanta Public
Forked from bhattlab/phantaWorkflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes
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python_devops_book Public
Forked from paiml/python_devops_book[Book-2020] Python For DevOps: Learn Ruthlessly Effective Automation
Jupyter Notebook MIT License UpdatedApr 25, 2024 -
gpt4all Public
Forked from nomic-ai/gpt4allgpt4all: run open-source LLMs anywhere
C++ MIT License UpdatedApr 24, 2024 -
Book-Mathematical-Foundation-of-Reinforcement-Learning Public
Forked from MathFoundationRL/Book-Mathematical-Foundation-of-Reinforcement-LearningThis is the homepage of a new book entitled "Mathematical Foundations of Reinforcement Learning."
MATLAB UpdatedApr 23, 2024 -
cactus Public
Forked from ComparativeGenomicsToolkit/cactusOfficial home of genome aligner based upon notion of Cactus graphs
C Other UpdatedApr 23, 2024 -
geocompr Public
Forked from geocompx/geocomprGeocomputation with R: an open source book
R Other UpdatedApr 22, 2024