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    Jmol

    Jmol

    An interactive viewer for three-dimensional chemical structures.

    Over 1,000,000 page views per month. Jmol/JSmol is a molecular viewer for 3D chemical structures that runs in four independent modes: an HTML5-only web application utilizing jQuery, a Java applet, a stand-alone Java program (Jmol.jar), and a "headless" server-side component (JmolData.jar). Jmol can read many file types, including PDB, CIF, SDF, MOL, PyMOL PSE files, and Spartan files, as well as output from Gaussian, GAMESS, MOPAC, VASP, CRYSTAL, CASTEP, QuantumEspresso, VMD, and many other...
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    36 Reviews
    Downloads: 803 This Week
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  • 2
    MANTI

    MANTI

    MANTI - Mastering Advanced N-Termini Interpretation

    ...A graphical interface is available as Yoğurtlu_MANTI (a Perl/Tk script) + execut. application versions for Win1x without the need to have Perl installed locally. For a very detailed explanation of script parameters and the evaluation strategy, please consult the extensive manual PDF
    Downloads: 1 This Week
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  • 3
    MANTI.pl / muda.pl

    MANTI.pl / muda.pl

    muda.pl - MQ unified data assembler

    ...Maybe also useful for normal proteomics purposes but this script is heavily optimized for protein neo-termini identification and validation. For a more thorough explanation of script parameters and evaluation strategy, please consult the extensive manual PDF.
    Downloads: 0 This Week
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  • 4
    Kinannote

    Kinannote

    Protein Kinase Identification and Classification

    ...Smith; Brian Haas; Jennifer Wortman; Qiandong Zeng Bioinformatics 2013; doi: 10.1093/bioinformatics/btt419 http: http://bioinformatics.oxfordjournals.org/content/29/19/2387.full pdf: http://bioinformatics.oxfordjournals.org/content/29/19/2387.full.pdf+html
    Downloads: 1 This Week
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  • 5
    Arcadia is a light-weight, cross-platform, C++ desktop application designed for visualizing biological networks such as metabolic pathways.
    Downloads: 0 This Week
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  • 6
    cy2fluxviz

    cy2fluxviz

    cy2fluxviz : Cytoscape 2 plugin for flux distribution visualization

    cy2fluxviz - Cytoscape 2 Plugin for the visualization of flux distributions in networks. Latest releases from https://github.com/matthiaskoenig/cy2fluxviz
    Downloads: 0 This Week
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  • 7
    ProteinTracker

    ProteinTracker

    Protein Reagent Tracking and Request

    A web based application to track protein related reagents including DNA constructs, cell lines, supes, and purified proteins. Supports creating, tracking, and prioritizing requests for transfections and DNA. Includes search and PDF reports.
    Downloads: 0 This Week
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  • 8
    CNV Workshop is a web-enabled platform for analyzing genome variation such as copy number variation (CNV). Learn about CNV Workshop in our associated BMC Bioinformatics manuscript: http://www.biomedcentral.com/1471-2105/11/74
    1 Review
    Downloads: 0 This Week
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  • 9
    RReportGenerator aims to provide a simple and user-friendly multi-platform graphical user interface (GUI) allowing to run routine statistical analysis using R via predefined analysis scenarios to produce reports in pdf-format.
    Downloads: 0 This Week
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