Open Source Python Command Line Tools for Linux

csv2odf can create business intelligence reports from csv data sources with output to ods, odt, html, xlsx, or docx documents. It uses a template file that you design to control the layout, fonts, and colors. Just query your database with output to csv (or tsv), then use csv2odf to insert the data into your template to produce a nice looking formatted output. It is a command line tool and you can automate the generation of reports by using scripts and cron. It can be used to create spreadsheets and documents for LibreOffice, OpenOffice, Microsoft Office Excel and Word. It is open source GPL v3 and crossplatform, it can run on most operating systems that can run Python (Python is required). More details, example files, and online manual at http://csv2odf.sf.net.

ADOMA stands for: Alternative Display Of Multiple Alignment. ADOMA can create four different displays of a multiple sequence alignment: a ClustalW alignment in HTML format, a simplified ClustalW alignment in HTML and/or txt format and a colored ClustalW alignment in HTML format. For examples of these outputfiles check the screenshots. ADOMA uses ClustalW to create the multiple alignment from DNA or protein sequences and displays them slightly different than the normal output of ClustalW. ADOMA is a commandline program that can easily be used in pipelines. For more information check the README.md in the Files section. How to cite ADOMA: Zaal, D. and Nota, B. (2016), ADOMA: A Command Line Tool to Modify ClustalW Multiple Alignment Output. Mol. Inf., 35: 42–44. doi: 10.1002/minf.201500083 http://onlinelibrary.wiley.com/doi/10.1002/minf.201500083/abstract

Python library and command line tool to generate maps in PDF format an place objects on them.