Open Source Mac Data Analytics Tools - Page 7

GmanDA is a GPL software for performing qualitative data analysis on mailing-lists and mboxes. It was developed to ease the work with large scale mailing-list archives taken from Gmane.org

"Grid3D Toolbox" is a set of command line tools for visualization and analysis of the results of molecular simulations based on 3-dimensional density maps (grids). Currently, the tools only work with the simulation trajectories generated by the GROMACS simulation package (http://www.gromacs.org/). The generated density maps are saved in the Grid3D native .g3d format and can be visualized using a third party data visualization software. A converter from the .g3d format to .vti, an XML based format of the VTK library is provided with the "Grid3D Toolbox", so that the generated density maps can be visualized using the ParaView data analysis and visualization software (http://www.paraview.org). For more details read the upcoming publication in Faraday Discussions: FD169: Density based visualization for molecular simulation.

The emerging genome-wide hairpin bisulfite sequencing technique facilitates the determination of DNA methylation fidelity and accurate methylation calling. Here we present HBS analyzer, the first command line based open-source tool to process genome-wide hairpin bisulfite sequencing data. It accepts Illumina paired-end sequencing reads as input, performs alignment to recover the original (pre-bisulfite-converted) DNA sequences and calls methylation status for cytosines on both DNA strands.

HCS Analyzer is an open source software dedicated to High Content Screening data processing and analysis.

HyPhy is a comprehensive environment for maximum likelihood statistical analysis of genetic sequence data. It includes a large collection of out of the box analyses, a feature-rich graphical user interface for custom data analysis and a scripting languag

The Integrated Analysis Platform (IAP) has been designed and developed to support the analysis of large-scale image data sets of different camera systems. It aims in bridging different data domains and in integrating different approaches to data analysis and post-processing.

IDA intelligence data analytics is an application framework for analysing intelligence data using php and javascript web application frameworks. The PHP framework is based on KohanaPHP and the Javascript framework is based on JQuery.

IVuPy is a set of Python bindings for the Coin3D C++ class libraries which serve to create software for 3D visualization in science and engineering. IVuPy aims to be a solid basis for large Python programs for 3D visualization and data analysis.

Matlab freeware for data analysis, by J. M. Lilly

JNeuron is an analysis tool for multi-neuronal spike train analysis. The tool will allow scientists to organize their spike train data analysis into projects. The tool will implement standard spike train analysis algorithms and also datamining algorithms

JProGraM (PRObabilistic GRAphical Models in Java) is a statistical machine learning library. It supports statistical modeling and data analysis along three main directions: (1) probabilistic graphical models (Bayesian networks, Markov random fields, dependency networks, hybrid random fields); (2) parametric, semiparametric, and nonparametric density estimation (Gaussian models, nonparanormal estimators, Parzen windows, Nadaraya-Watson estimator); (3) generative models for random networks (small-world, scale-free, exponential random graphs, Fiedler random fields), subgraph sampling algorithms (random walk, snowball, etc.), and spectral decomposition.

JSMN (pronounced "jasmine") is a minimalistic JSON parser in C. It's tailored for resource-constrained environments, making it ideal for embedded systems where efficiency and low memory footprint are paramount.​

Open source framework for processing, monitoring, and alerting on time series data. Kapacitor is a real-time data processing engine for monitoring and alerting, specifically designed to work with time-series data from InfluxDB.

LaCor is intended for physical data analysis in High Energy Physics field. It was originally designed to aid in lambda hyperon correlations research in the Selex@FNAL experiment, but it should be useful for similar studies.

A suite of tools targeted for parsing and analyzing limit order data.

LinDB is a scalable, high-performance, high-availability distributed time series database. A single server could easily support more than one million write TPS; With fundamental techniques like efficient compression storage and parallel computing, LinDB delivers highly optimized query performance. The multi-channel replication protocol supports any amount of nodes, and ensures the system's availability. Schema-free multi-dimensional data model with Metric, Tags, and Fields; The LinQL is flexible yet handy for real-time data analytics. Horizontal scalable is made simple by adding more new broker and storage nodes without too much thinking and manual operations. And the tags-based sharding strategy resolves the hotspot problem. LinDB is designed to work under a Multi-Active IDCs cloud architecture. The compute layer of LinDB, called brokers, supports efficient Multi-IDCs aggregation query.

link-preview-js is a lightweight TypeScript library that extracts metadata from URLs or HTML content to generate rich link previews. By parsing Open Graph tags and other metadata, it retrieves information such as titles, descriptions, images, and videos. Designed primarily for Node.js and mobile environments, it facilitates the creation of link previews similar to those found on social media platforms.​

LithoGraphX is an open source software for scientists, by scientists. It aims at providing the plant science community with a solid, open, community developed, software for 3D data analysis and visualization. LithoGraphX is a fork of the MorphoGraphX project.

Logbus-ng consists in a set of tools to aid developers perform Log Analysis in all the stages: log generation, collection, distribution, storage and analysis. It is designed specifically for Field Failure Data Analysis in critical distributed systems

Advances in high-resolution mass spectrometry facilitate the identification of hundreds of metabolites, thousands of proteins and their post-translational modifications. This remarkable progress poses a challenge to data analysis and visualization, requiring methods to reduce dimensionality and represent the data in a compact way. To provide a more holistic view, we recently introduced circular proteome maps (CPMs). However, the CPM construction requires prior data transformation and extensive knowledge of the Perl-based tool, Circos. We present MS-Helios, an easy to use command line tool with multiple built-in data processing functions, allowing non-expert users to construct CPMs or in general terms circular plots with a non-genomic basis. MS-Helios automatically generates data and configuration files to create high quality and publishable circular plots with Circos.

LMS Tools is a set of tools and libraries for administrators and users of learning management systems to perform, for example, portal integration, LMS management or usage data analysis.

A set of Matlab functions which compute effect size statistics and (exact) confidence intervals for a wide range of data analysis situations, including two-sample-, oneway-, twoway- and contrast analyses as well as categorical data in tables.

An end-to-end solution for medical management including dispatching medical units, employee management, medical billing, and data analysis.

MoDAVE aims at providing data analysis and visualization extensions to Mosaic datasets, including cubed sphere data, to the Climate Data Analysis Tools (CDATA) in particular.

ModuleFair is a generic, module-based framework upon which to quickly build anything from data analysis programs to game level editors. This project is no longer maintained.