Open Source Data Management Systems

Avogadro is an advanced molecular editor designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials science and related areas. It offers a flexible rendering framework and a powerful plugin architecture.

The PDL module gives standard perl the ability to COMPACTLY store and SPEEDILY manipulate the large N-dimensional data sets that are the bread and butter of scientific computing.

Java package to study a clustering model described in the paper \"Novel Clustering Algorithm Based Upon Games on Evolving Network\" by Q. Li, Z. Chen, Y. He and J-P. Jiang (in arxiv: http://arxiv.org/pdf/0812.5064v1), generalizations and similar issues.

Coding convenient Aero & Astro functions into one easy to use package. From rocket engine design, to flight and space dynamics.

A Perl object-oriented library for plotting graphs with Gnuplot.

This project will facilitate the development of the community foundation Data Atlas project, which will build a provider neutral data mart integrating and supporting the work of the field across all applications. See documentation for project overview.

** Deprecated ** Important! All of the software on this web site has been deprecated, and has not been maintained since 2014. All of this software is now being maintained on Github - and can be obtained from https://github.com/jpaulm . Changes and enhancements are still ongoing, and while older software should still work, newer features described in the literature will not be available in SourceForge. The old license was the Artistic license - the software is now in process of being converted to LGPL. This will gradually take place (on Github) over the next few months (in 2016). JavaFBP is now also on Maven.

IDEA (Interactive Display for Evolutionary Analyses) augments PAML with a graphical interface, phylogeny reconstruction using PhyML or PHYLIP, convenient and efficient parallel processing and visualizations.

JimboVector 3D is a suite of applications and source code which allow 3D application developers to easily implement complex 3D items into their projects. Such items would include character animations and physics, 3D maps, realtime 3D animated cutscenes,

physicslib:- A library of rigid body physics routines and demos, designed for use in VR and entertainment applications. With tutorial style documentation intended to explain the concepts used in the code.

SIRS stands for "Smart Indicators for Reflection Support". SIRS is a framework for developing Indicators on top of sensor networks in web-based and ambient environments for data aggregation, information visualization and context adapation.

SPM surfrend toolbox is a suite of scripts that add surface-based rendering capabilities to SPM99/2 generated statistical maps.

StarMap 3D: the project aims to offer a fast and easy consultation of stellar systems

TM4 is a suite of applications for managing and analyzing microarray data. TM4 provides data storage and tracking, image analysis, normalization, data filtering, clustering and statistical analysis capabilities. Includes MADAM, Spotfinder, MIDAS, and MeV.