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Over 1,000,000 page views per month. Jmol/JSmol is a molecular viewer for 3D chemical structures that runs in four independent modes: an HTML5-only web application utilizing jQuery, a Java applet, a stand-alone Java program (Jmol.jar), and a "headless" server-side component (JmolData.jar). Jmol can read many file types, including PDB, CIF, SDF, MOL, PyMOL PSE files, and Spartan files, as well as output from Gaussian, GAMESS, MOPAC, VASP, CRYSTAL, CASTEP, QuantumEspresso, VMD, and many other...

JaxoDraw is a tool to generate Feynman diagrams in a mouse click-and-drag fashion. Graphs can be exported to a variety of graphics formats and arbitrary latex code can be used for labels to produce high-quality publishing-style figures.

...Customize the look of nodes, edges, and clusters with the Style Designer. Build a CSS-like gallery of reusable styles that lets you apply consistent visual themes. Run SQL queries for advanced data import. Export graphs as BMP, GIF, JPG, PDF, PNG, or SVG files (with animation support). View Graphviz DOT code and command-line messages. Works on Windows and macOS with a ribbon interface and UTF-8 support for global text. Explore illustrated guides at https://exceltographviz.com With over 10,000 downloads and a SourceForge Community Choice award, this open-source VBA tool clarifies complex data. ...