Open Source Information Analysis Software

OpenMRS is a community-developed, open source, enterprise electronic medical record system. Our mission is to improve health care delivery in resource-constrained environments by coordinating a global community to creates and support this software.

*** This is an archive only, please see https://github.com/ANTsX for this and other ANTsX tools *** Image registration with variable transformations (elastic, diffeomorphic, diffeomorphisms, unbiased) and similarity metrics (landmarks, cross-correlation, mutual information, etc). Image segmentation with priors & nonparametric, multivariate models. *** Current ANTs code, binaries (Mac, Windows, Linux) and support is hosted at Github *** https://github.com/ANTsX/ANTs Docker hub: https://hub.docker.com/u/antsx Older code and binaries remain available here on SourceForge (1.9x, pre 2014). If you are new to ANTs you should probably go to Github and get the latest code.

Thea, Tools for High-throughput Experiment Analysis, is an integrated information processing system dedicated to the annotation of data issued from classification systems with biological information coming from a knowledge base.

Census is a comprehensive cross-platform project manager and integration hub for NONMEM, the gold standard tool for model-based pharmacometric data analysis.

In intensive care units (ICU) patients vital signs are monitored. This is an attempt to build an interface which can show external and simulated medical data, to mimic these patient monitors. The motivation for this project are my experiments with building medical devices.

BioNLP-Corpora is a repository of biomedically and linguistically annotated corpora and biomedical data sources. There are many resources available in separate packages in this project.

ThoughtFlow-Sys is a new computer neuropsychological test developed in Python to study the verbal expression of thought flow, using a modification of Jung´s Word-Association Test. © 2008 - UNIFESP / Rodrigo C. Vertulo / Prof. Dr. Carlos J. R. Campos

EEG-Holter - Designed for analysis of long-term EEG - Holter. Java developed, it supports medical and logbook anotations, epileptic events data, graphics and EDF files. UNIFESP © 2009 - Aristides Tavares dos Santos, Prof. Dr. Carlos J R Campos.

Xpose - an S/R based population PK/PD model building aid for NONMEM.

This project provides visual interactive interfaces to custom algorithms used in genomes research.

A java based neural network framework. The Auratus network is built around an XML messaging system, allowing for a complete MVC design. Additionally, Auratus networks are constructed and at the node/edge level, allowing for advanced topologies.

Evidence-based Guideline and Decision Support System. Provides patient specific point of care reminders in order to aid physicians provide high quality care. Input/output in the form of HL7 CDA Level 2 documents. Knowledge is encoded using Arden Syntax.

FreeBrain will be an application for the analysis of 2D neurophysiological signals, like heart-rate, EEG or eyemovements. It is aimed at those who want intuitive or free software and those who want a customizeble tool that can handle mixed datasets.

Java GUI to analyze one (or more, in batch mode) datasets with several feature selection methods at the same time and also performing an "ensemble" analysis. It can be easily extended to include any feature selection algorithm.

NeoBio is a Java class library of Computational Biology Algorithms. The current version consists mainly of pairwise sequence alignment algorithms such as the classical dynamic programming methods of Needleman-Wunsch and Smith-Waterman.

Pattern recognition system written in Java. Provide statistical informations about satellite and medical imagery; and also recognize symbols in a gaussian blur.

OpenClinics is a software platform for the collection, maintainance and analysis of medical, (primarily disease-based), information for use by medical clinics worldwide.

PHP Growth Charts provides a simple PHP interface to generate graphical (PNG-format) pediatric growth charts, based on CDC data, and plot patient progress.

PubCurator is a biomedical text mining platform and validation helper built on top of Eclipse RCP.

A Python function library to extract EEG feature from EEG time series in standard Python and numpy data structure. Features include classical spectral analysis, entropies, fractal dimensions, DFA, inter-channel synchrony and order, etc.

QSAR is a project that aims to build a GUI that enables people to build quantitative structure activity (or property) relationship models. It will use parts of CDK (cdk.sf.net), JOELib (joelib.sf.net), R (www.r-project.org) and other projects.

The purpose of the Programmable Chip EEG BCI project is to create a EEG that is modernized with some of the latest hardware. The Design uses lower amplification and higher bit analog to digital converters to remove the need for filtering and amplifying.

A tool set for registering and statistically analyzing medical images with special focus on the human skeleton.

Sight provides a friendly interface to create and connect agents for bioinformatics. The workflow supports multiple responses to a single request, structure transforms, filters and request history access.Can talk with ordinary http servers (get and post)

The project is a J2EE-based decision support sytem designed to be used in healthcare scenarios.