Search Results for "meta data tools"
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Showing 44 open source projects for "meta data tools"
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MongoDB Atlas runs apps anywhereMongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.
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BioSig is a software library for processing of biomedical signals (EEG, ECG, etc.) with Matlab, Octave, C/C++ and Python. About 50 different data formats are supported.
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EEGLAB
EEGLAB is an open source signal processing environment
EEGLAB is an open source, MATLAB-based interactive environment for analyzing electrophysiological signals such as EEG and MEG. It incorporates powerful tools for data import, preprocessing, independent component analysis (ICA), time-frequency analysis, artifact rejection, and visualization—all within a GUI framework that also supports scripting and plugin extensions. EEGLAB is an open source signal processing environment for electrophysiological signals running on Matlab and Octave (command line only for Octave). ... -
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hctsa
Highly comparative time-series analysis
hctsa is a Matlab software package for running highly comparative time-series analysis. It extracts thousands of time-series features from a collection of univariate time series and includes a range of tools for visualizing and analyzing the resulting time-series feature matrix. -
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CBIG
Computational Brain Imaging Group tools
CBIG is a comprehensive toolkit maintained by Thomas Yeo’s Computational Brain Imaging Group containing tools for processing and analyzing neuroimaging data—including fMRI preprocessing pipelines, brain parcellation algorithms, mental disorder subtyping models, fMRI dynamic models, registrations between brain spaces, and phenotypic prediction algorithms. After cloning/downloading this repository, please see README inside setup directory to see instructions on how to set up your local environment to be compatible with our repository. ... -
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Peroxide
Rust numeric library with high performance and friendly syntax
Rust numeric library contains linear algebra, numerical analysis, statistics and machine learning tools with R, MATLAB, Python-like macros. Peroxide uses a 1D data structure to represent matrices, making it straightforward to integrate with BLAS (Basic Linear Algebra Subprograms). This means that Peroxide can guarantee excellent performance for linear algebraic computations by leveraging the optimized routines provided by BLAS. For users familiar with numerical computing libraries like NumPy, MATLAB, or R, Rust's syntax might seem unfamiliar at first. ... -
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MCM-ICM
Mathematical Contest resources
MCM-ICM is a curated archive of Outstanding Winner (“O-奖/特等奖”) solution papers from the Mathematical Contest in Modeling and the Interdisciplinary Contest in Modeling, spanning the early 2000s through recent years. The repository is organized by year, with per-year folders that collect the top-ranked reports and, in later years, additional materials such as problem statements or problem notes when available. It has evolved from a single-maintainer project into a collaborative effort, with... -
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Armadillo
fast C++ library for linear algebra & scientific computing
* Fast C++ library for linear algebra (matrix maths) and scientific computing * Easy to use functions and syntax, deliberately similar to Matlab / Octave * Uses template meta-programming techniques to increase efficiency * Provides user-friendly wrappers for OpenBLAS, Intel MKL, LAPACK, ATLAS, ARPACK, SuperLU and FFTW libraries * Useful for machine learning, pattern recognition, signal processing, bioinformatics, statistics, finance, etc. * Downloads:... -
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AtomProbeLab
Matlab-based analysis of Atom Probe Data
A collection of scripts and functions for the analysis of atom probe tomography data. Currently, this includes: standard file operations, plotting mass spectra, mass spectra analysis and mass peak overlap solving. For more information see the Wiki: https://sourceforge.net/p/atomprobelab/wiki/Home/ Quick overview video: https://youtu.be/8rJHce7M5UU More in-depth video using the APT school demos live script: https://www.youtube.com/watch?v=cyrLHCzZwuw For details of the maximum... -
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The Sound Description Interchange Format (SDIF) is an established standard for the interchange of sound descriptions and analysis data. This project provides libraries, SDIF (in C) and Easdif (in C++), tools, and wrappers to read and write SDIF files.
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SOFA Toolbox
Spatially Oriented Format for Acoustics
This project provided the SOFA Toolbox, a toolbox for the spatially oriented format for acoustics (SOFA). The SOFA Toolbox is the successor of the SOFA API for Matlab/Octave. More information about SOFA can be found here: http://sofaconventions.org On July 2025, we have left SourceForge: The SOFA Toolbox 2.2.0 is the last release published here. All further releases can be found at the SONICOM Ecosystem: https://ecosystem.sonicom.eu/tools/ The code development happens on GitHub:... -
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ReViMS
ReViMS, a 3D volume rendering tool for light-sheet/confocal microscopy
Reconstruction and Visualization from Multiple Sections (ReViMS), an open-source, user-friendly software for automatically estimating volume and several other features of 3D multicellular aggregates (i.e., cancer spheroid, zebrafish, fruit fly). ReViMS requires a z-stack of 2D binary masks, obtained by segmenting a sequence of fluorescent images acquired by scanning the aggregate along the z axis, using a confocal or a light-sheet fluorescent microscope. It provides a number of tools... -
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ebfformat
An Efficient Binary data Format
...It is also designed to simplify the programming of input output routines in different programming languages. In a nutshell an EBF file is a collection of data objects. Each data object is specified by a unique name and a single file can have multiple data objects. Each data object is preceded by a meta-data or header which describes the binary data associated with it. Among other things, this header allows the files to be portable across systems with different endianess. -
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Omniglot
Omniglot data set for one-shot learning
...Includes stroke data (time-sequenced coordinates) per sample. The repository is intended as a benchmark dataset in few-shot / meta-learning research, not as a plug-and-play detection or classification engine. Pre-split “background” and “evaluation” alphabets for standard benchmarking. -
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Kalibr Allan
IMU Allan standard deviation charts
kalibr_allan is a utility repository that provides scripts and tools for calculating IMU noise parameters for use in Kalibr and other IMU filtering systems. While manufacturers typically provide “white noise” values in IMU datasheets, the bias instability and random walk parameters must be determined experimentally. This project enables users to compute those values using Allan variance analysis from recorded IMU data. -
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MatlabFunc
Matlab codes for feature learning
...The repository brings together a wide range of utility scripts, algorithms, and implementations that serve as building blocks for research and development. These functions cover areas such as matrix operations, optimization, data processing, and visualization, making them broadly applicable across different research domains. The project is intended to provide reusable and adaptable MATLAB code that can save time for researchers and students working on experimental or applied projects. By consolidating these tools in one place, MatlabFunc serves as a practical reference and toolkit for both academic and engineering purposes. ... -
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mctc4bmi
Matrix and Tensor Completion for Background Model Initialization
MCTC4BMI (Multimodal Compressed Sensing and Tensor Decomposition for Brain-Machine Interfaces) is a MATLAB toolbox designed to process and analyze EEG data. It applies compressed sensing and tensor decomposition techniques to improve brain-machine interface (BMI) performance. -
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Development of new data assimilation techniques for ocean models
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MetaOpen
Metabolomics Bioinformatics Tools
Our bioanalytical research exploits practical and efficient high-throughput technologies for the analyses of complex mixtures derived from living systems. This will facilitate the development of preventive, predictive and personalized medicine for specific diseases and will promote health and wellness. We use a number of high-throughput analytical platforms including multidimensional liquid chromatography-mass spectrometry (MDLC-MS) for proteomics, and for metabolomics; liquid... -
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SPIW - Scanning Probe Image Wizard
Scanning Probe Image Wizard - MATLAB Toolbox
SPIW is a MATLAB toolbox, for automated processing of scanning probe microscope images. Tools are applicable to all SPM images, but the main focus is on images with atomic or molecular resolution. SPIW is primarily a MATLAB toolbox with functions designed to be called in a user's own script. SPIW also has a very basic GUI for browsing and exporting images. For information on SPIW's performance see our publication ( http://dx.doi.org/10.1063/1.4827076 ) in the Review of Scientific... -
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Qi - Quantitative Imaging (PIV and more)
A collection of MATLAB tools for PIV, PTV, particle sizing, and more.
Qi is a collection of MATLAB tools for the quantitative analysis of flow field images. Our Particle Image Velocimetry (PIV) tool, prana, implements a Robust Phase Correlation kernel for PIV analysis, and now includes Particle Tracking Velocimetry and sizing tools. Tools for pressure calculation, proper orthogonal decomposition (POD), and 3d imaging are under development. -
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Toolboxes for SPM (http://www.fil.ion.ucl.ac.uk/spm/) developed at Freiburg Brain Imaging (http://fbi.uniklinik-freiburg.de/)
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nail_systems_biology
NAIL is a toolset for network analysis in the life sciences
...Modelling biological systems as networks (graphs) is becoming a common approach in the life sciences. However, different algorithms typically use different input and output data types, are implemented using different technologies, and are demonstrated by application to different biological problems. Because of this, the primary goal of the NAIL project is to provide a straightforward way to use network approaches in the life sciences, and to apply a variety of techniques quickly and easily on the same data. -
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NaRIBaS
Unix-based preparation and analysis toolbox for molecular simulations
Unix-based preparation and analysis toolbox for Nanomaterials and Room Temperature Ionic Liquids in Bulk and Slab using bash scripts, Gromacs tools and Matlab functions. NaRIBaS provides a framework that decouples user input parameter and terminal based command lines. NaRIBaS does not replace a simulation software and specific analysis tools like Gromacs, but it allows iterative repetition of tasks while changing specific input parameter. The toolbox is to be understood as a scripting framework rather than a black-box software. ... -
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Matlab tool for plotting multi-channel biomedical signals. It is designed for researchers on both engineering and medicine who have to collaborate to visualize and analyze signals. It is the ideal tool to plot electroencephalogram (EEG), Foetal Heart Rate (FHR) and many other signals with the standard tools used in clinical routine.
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