Search Results for "mpi"
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Showing 109 open source projects for "mpi"
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MPI.jl
MPI wrappers for Julia
This is a basic Julia wrapper for the portable message-passing system Message Passing Interface (MPI). Inspiration is taken from mpi4py, although we generally follow the C and not the C++ MPI API. (The C++ MPI API is deprecated.) MPI is based on a single program, multiple data (SPMD) model, where multiple processes are launched running independent programs, which then communicate as necessary via messages. As the main entry point for users, MPI.jl provides a high-level interface which loosely follows the MPI C API and is described in details in the following sections. ... -
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Likwid
Performance monitoring and benchmarking suite
Likwid is a simple to install and use toolsuite of command line applications and a library for performance oriented programmers. It works for Intel, AMD, ARMv8 and POWER9 processors on the Linux operating system. There is additional support for Nvidia and AMD GPUs. There is support for ARMv7 and POWER8/9 but there is currently no test machine in our hands to test them properly. -
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ImplicitGlobalGrid.jl
Distributed parallelization of stencil-based GPU and CPU applications
...It renders the distributed parallelization of stencil-based GPU and CPU applications on a regular staggered grid almost trivial and enables close to ideal weak scaling of real-world applications on thousands of GPUs [1, 2, 3]. ImplicitGlobalGrid relies on the Julia MPI wrapper (MPI.jl) to perform halo updates close to hardware limit and leverages CUDA-aware or ROCm-aware MPI for GPU-applications. The communication can straightforwardly be hidden behind computation [1, 3] (how this can be done automatically when using ParallelStencil.jl is shown in; a general approach particularly suited for CUDA C applications is explained in. -
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Volcano
A Cloud Native Batch System (Project under CNCF)
...It provides a suite of mechanisms that are commonly required by many classes of batch & elastic workload including machine learning/deep learning, bioinformatics/genomics, and other "big data" applications. These types of applications typically run on generalized domain frameworks like TensorFlow, Spark, Ray, PyTorch, MPI, etc, which Volcano integrates with. Volcano builds upon a decade and a half of experience running a wide variety of high-performance workloads at scale using several systems and platforms, combined with best-of-breed ideas and practices from the open-source community. Until June 2021, Volcano has been widely used around the world at a variety of industries such as Internet/Cloud/Finance/ Manufacturing/Medical. ... -
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Appfl
Advanced Privacy-Preserving Federated Learning framework
APPFL (Advanced Privacy-Preserving Federated Learning) is a Python framework enabling researchers to easily build and benchmark privacy-aware federated learning solutions. It supports flexible algorithm development, differential privacy, secure communications, and runs efficiently on HPC and multi-GPU setups. -
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Kubeflow Training Operator
Distributed ML Training and Fine-Tuning on Kubernetes
Kubeflow Training Operator is a Kubernetes-native project for fine-tuning and scalable distributed training of machine learning (ML) models created with various ML frameworks such as PyTorch, TensorFlow, XGBoost, MPI, Paddle, and others. -
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libfabric
AWS Libfabric
...Its custom-built operating system (OS) bypass hardware interface enhances the performance of inter-instance communications, which is critical to scaling these applications. With EFA, High Performance Computing (HPC) applications using the Message Passing Interface (MPI) and Machine Learning (ML) applications using NVIDIA Collective Communications Library (NCCL) can scale to thousands of CPUs or GPUs. As a result, you get the application performance of on-premises HPC clusters with the on-demand elasticity and flexibility of the AWS cloud. -
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FFTW++ is a C++ header class for the FFTW Fast Fourier Transform library that automates memory allocation, alignment, planning, wisdom, and communication on both serial and parallel (OpenMP/MPI) architectures. In 2D and 3D, hybrid dealiasing of convolutions substantially reduces memory usage and computation time. Wrappers for C, Python, and Fortran are included.
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PelicanHPC is an iso-hybrid (CD or USB) image that let's you set up a high performance computing cluster in a few minutes. A Pelican cluster allows you to do parallel computing using MPI. You can run Pelican on a single multiple core machine to use all cores to solve a problem, or you can network multiple computers together to make a cluster. The frontend node (either a real computer or a virtual machine) boots from the image. The compute nodes boot by PXE, using the frontend node as the server. All of the nodes of the cluster get their filesystems from the same image, so it is guaranteed that all nodes run the the same software. ...
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ceenv
Computer Experiment Environment
...It is being developed and distributed as a training environment of UNIX (UNIX commands, network, Emacs, Gnuplot), programming language (C, C++, Fortran, Python 2/3, MPI, OpenMP, BLAS/LAPACK), etc. The whole environment is included in one VirtualBox virtual disk image, and users can use it immediately by simply importing the image into VirtualBox. -
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SWAN is a third-generation wave model, developed at Delft University of Technology, that computes random, short-crested wind-generated waves in coastal regions and inland waters.
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Classdesc is a system for adding reflection to C++, ie the ability to query an object's structure at runtime.
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SUNTANS
Unstructured-grid, nonhydrostatic ocean model
The Stanford unstructured-grid, nonhydrostatic, parallel coastal ocean model. For simulation of nonhydrostatic flows at high resolution in estuaries and coastal seas. Requires a grid generator and ParMETIS (if run in parallel). -
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SWASH is a general-purpose numerical tool for simulating unsteady, non-hydrostatic, free-surface, rotational flow and transport phenomena in coastal waters as driven by waves, tides, buoyancy and wind forces. It provides a general basis for describing wave transformations from deep water to a beach, port or harbour, complex changes to rapidly varied flows, and density driven flows in coastal seas, estuaries, lakes and rivers.
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SGE_GPU
Patch to SGE 2011.p1,Son of Grid Engine, multiple GPU, Linux
Patch to SGE 2011.p1, Son of Grid Engine 8.18, to enable multiple GPU scheduling. It schedules GPUs to jobs, or processes for MPI jobs(in file "environment" on work nodes). Recompile the source needed. Also, you need to set a consumable, named "ngpus". And assign value of it to each node. When submit GPU job, run: >qsub -l ngpus=1 ... This also works for parallel jobs. >qsub -pe openmpi 4 -l ngpus=1 ... Here, "-l ngpus=1" request 1 GPU for 1 process. ... -
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Hex
Hydrogen-Electron Collisions
A computer code for simulation of electron-hydrogen scattering. Contains three (more or less) finished sub-programs: (a) “hex-ecs” which solves the Schrödinger equation in the B-spline basis, (b) “hex-dwba” which computes scattering variables for high energies using the distorted wave Born approximation of the first order and finally (c) “hex-db” which is a user interface to a plain SQLite database, where the intermediate results are being stored, and which is used to extract... -
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DAE Tools Project
Object-oriented equation-based modelling and optimisation software
DAE Tools is a cross-platform equation-based object-oriented modelling, simulation and optimisation software. It is not a modelling language nor a collection of numerical libraries but rather a higher level structure – an architectural design of interdependent software components providing an API for: - Model development/specification - Activities on developed models, such as simulation, optimisation, sensitivity analysis and parameter estimation - Processing of the results, such as... -
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CAMPARI
Software for molecular simulations and trajectory analysis
We are proud to introduce version 5 of CAMPARI. We have added a number of new features, most notably a Python interface for interpreting user-supplied code (with the help of ForPy), a novel trajectory storage standard (with the help of libpqxx/PostgreSQL), and a module for performing transition path theory. Naturally, CAMPARI continues to provide the reference implementation of the ABSINTH force field paradigm and implicit solvation model. CAMPARI is a joint package for performing and... -
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Evolutionary Computation Framework
C++ framework for application of any type of evolutionary computation.
ECF is a framework intended for application of any type of evolutionary computation (GA/GP, DE, Clonalg, ES, PSO, ABC, GAn, local search...). It offers simplicity for the end-user (parameterless usage, tutorial) and customization for experienced EC practicioners. -
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JavaSeis.org: Java based software for processing and storing petroleum industry seismic data.
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RM3 Engine Multi Platform Interface is an open source interface in development for easy integration of the RM3 Engine product by Capgemini. The RM3 Engine is a piece of software written in Java, which calculates promotions for POS applications. More info can be found at https://www.capgemini.com/consumer-products-retail/retail-mix-match
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Rocstar Multiphysics Application
Parallel coupled multiphysics simulation application
...Rocstar couples multiple domain-specific simulation packages and disparately discretized domains and provides several simulation-supporting services including conservative and accurate data transfer, surface propagation, and parallel I/O. Rocstar is MPI parallel and routinely executes large simulations on massively parallel platforms. Rocstar was originally developed at the University of Illinois Center for Simulation of Advanced Rockets (CSAR) under Department of Energy ASCI funding. Ongoing development of Rocstar is conducted by Illinois Rocstar LLC with company IR&D and continued DOE SBIR funding. -
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CASUP
Cellular Automata library for SUPercomputers (CASUP)
...Margetts, Three-dimensional cellular automata modelling of cleavage propagation across crystal boundaries in polycrystalline microstructures, Proc. Roy. Soc. A 471:20150039, DOI: http://dx.doi.org/10.1098/rspa.2015.0039. CASUP can be linked with FE (e.g. MPI FE library ParaFEM, http://parafem.org.uk) for a multi-scale multi-physics CA-FE framework. CASUP extensively uses Fortran 2008 and 2018 coarrays, as well as MPI, OpenMP and do concurrent. CASUP can be used with Cray, Intel and GCC/OpenCoarrays compilers. Scaling beyond 100,000 cores on Cray XC30 was demonstrated. -
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pFUnit
Unit testing framework for Fortran with MPI extensions
pFUnit is now hosted and developed on GitHub. And will be completely removed from sourceforge on January 01, 2020 Please use: https://github.com/Goddard-Fortran-Ecosystem/pFUnit GitHub has been the primary host for some time now, but with the release of pFUnit 4.0 earlier in 2019, the sourceforge site is very out of date. -
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Tiramisu
Polyhedral compiler for expressing fast and portable data algorithms
...The Tiramisu compiler is based on the polyhedral model thus it can express a large set of loop optimizations and data layout transformations. Currently, it targets (1) multicore X86 CPUs, (2) Nvidia GPUs, (3) Xilinx FPGAs (Vivado HLS) and (4) distributed machines (using MPI). It is designed to enable easy integration of code generators for new architectures.
