PDPBioGen Code

# Core data science
numpy>=1.21.0
pandas>=1.3.0
scipy>=1.7.0
scikit-learn>=1.0.0

# Neuroimaging
nilearn>=0.9.0
nibabel>=3.2.0
mne>=1.0.0

# Genomics/Bioinformatics
biopython>=1.79
mygene>=3.2.2
bioservices>=1.8.0
pyensembl>=1.9.0

# Metabolomics
metabolabpy>=0.3.0
cobrapy>=0.25.0

# ML/AI frameworks
torch>=1.9.0
transformers>=4.15.0
datasets>=2.0.0

# Visualization
plotly>=5.0.0
dash>=2.0.0
matplotlib>=3.5.0
seaborn>=0.11.0

# Utilities
tqdm>=4.62.0
requests>=2.25.0
pyyaml>=6.0
joblib>=1.1.0

# Your adapted frameworks will be included directly