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from setuptools import setup, find_packages

import pathlib

pip install -e .

# or

export PYTHONPATH=$PWD:$PYTHONPATH

pytest -q

here = pathlib.Path(__file__).parent.resolve()



# Get long description from README

long_description = (here / "README.md").read_text(encoding="utf-8")



setup(

    name="pdpbiogen",

    version="0.1.0",

    description="Programmatic Diagram Pathway Biologist Generator - Automated biological pathway visualization",

    long_description=long_description,

    long_description_content_type="text/markdown",

    url="https://github.com/tlcagford/PDPBioGen",

    author="tlcagford",

    author_email="YOUR_EMAIL@example.com",

    classifiers=[

        "Development Status :: 4 - Beta",

        "Intended Audience :: Science/Research",

        "Topic :: Scientific/Engineering :: Bio-Informatics",

        "Topic :: Scientific/Engineering :: Visualization",

        "License :: OSI Approved :: MIT License",

        "Programming Language :: Python :: 3",

        "Programming Language :: Python :: 3.7",

        "Programming Language :: Python :: 3.8",

        "Programming Language :: Python :: 3.9",

        "Programming Language :: Python :: 3.10",

    ],

    keywords="bioinformatics, biology, pathway, visualization, graphviz",

    packages=find_packages(),

    python_requires=">=3.7, <4",

    install_requires=["pyyaml>=5.1", "graphviz>=0.14"],

    entry_points={

        "console_scripts": [

            "pdpbiogen=pdpbiogen.cli:main",

        ],

    },

    project_urls={

        "Bug Reports": "https://github.com/tlcagford/PDPBioGen/issues",

        "Source": "https://github.com/tlcagford/PDPBioGen",

    },

)