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This repository is home to the Deep Review, a review article on deep learning in precision medicine. The Deep Review is collaboratively written on GitHub using a tool called Manubot (see below). The project operates on an open contribution model, welcoming contributions from anyone. To see what's incoming, check the open pull requests. For project discussion and planning see the Issues. As of writing, we are aiming to publish an update of the deep review. We will continue to make project preprints available on bioRxiv or another preprint service and aim to continue publishing the finished reviews in a peer-reviewed venue as well. Like the initial release, we are planning for an open and collaborative effort. New contributors are welcome and will be listed as version 2.0 authors. Manubot is a system for writing scholarly manuscripts via GitHub. Manubot automates citations and references, versions manuscripts using git, and enables collaborative writing via GitHub.
Features
- Inference, imputation, and prediction
- DNA methylation
- Gene expression
- Applications of deep learning to longitudinal analysis
- Deep learning and patient categorization
- Electronic health records
Project Samples
