1.10.1 (2023-04-13)

Bug Fixes

• build: Fix incorrect classifiers and poetry not installing docs correctly. (ca5ec52)

1.10.0 (2023-04-13)

Features

• db: Add interface to GTDB common DB. (0fc4c46)

1.9.0 (2023-03-03)

Features

• added run_bash() to execute.py as this can be useful for complicated shell commands (a87761e)

1.8.0 (2023-01-12)

Features

• moved over BioLib functionality required by the GTDB Species Cluster pipeline; predominately extensions to handle Greengenes-style taxonomy strings (df9e1fe)

1.7.0 (2023-01-07)

Features

• added execute.py and method for checking accession versions in accession.py. (eb7bd16)

1.6.0 (2022-12-19)

Bug Fixes

• bootstrap_merge: Fix a bug where taxa labels would be replaced each iteration. (a500f4e)
• cli: Update bootstrap_merge method to contain CPU argument. (7f53d98)
• cli: Update bootstrap_merge method to contain CPU argument. (17bd594)

Features

• bootstrap_merge: Updated to multiprocess on individual trees, not across multiple trees. (2c6046a)
• convert_accession: Add CLI and method to convert accessions within a tree to canonical form. (504154f)

1.5.0 (2022-12-15)

Bug Fixes

• typer: Fix minimum version of Typer for rich support. (afa2000)

Features

• bootstrap_merge: Improve performance of method by 30% using numpy. (cb1b03d)
• bootstrap_merge: Improve performance of method by 33% using numpy. (c0d0265)
• bootstrap_merge: Improve performance of method by 33% using numpy. (b24b3dc)

1.4.0 (2022-12-13)

Bug Fixes

• cli: Add CLI entrypoint to setup.py (5d471bc)

Features

• bootstrap_merge: Add multiprocessing option. (4aea129)

1.3.0 (2022-12-13)

Features

• cli: Add CLI and tree manipulation methods. (298954e)
• cli: Add CLI and tree manipulation methods. (263c2dd)
• cli: Add CLI and tree manipulation methods. (f7c04a1)

1.2.0 (2022-11-02)

Features

• change checksum to filemgmt: doc refactoring (25e9042)