Cloud tests for CompareReferences and CheckReferenceCompatibility tools

[orlicohen]

No description provided.

[droazen]

@orlicohen groups = "bucket" Needs to be uncommented here and in the other test before these will be able to pass on github

[orlicohen]

fixed

[codecov]

Codecov Report

Merging #7973 (397f40b) into master (c22972a) will increase coverage by 34.421%.
The diff coverage is 0.000%.

@@               Coverage Diff                @@
##              master     #7973        +/-   ##
================================================
+ Coverage     52.260%   86.680%   +34.421%     
- Complexity     29146     38451      +9305     
================================================
  Files           2310      2310                
  Lines         180344    180387        +43     
  Branches       19840     19846         +6     
================================================
+ Hits           94247    156360     +62113     
+ Misses         80124     17084     -63040     
- Partials        5973      6943       +970     

Impacted Files	Coverage Δ
.../hellbender/tools/reference/CompareReferences.java	66.667% <ø> (ø)
...ce/CheckReferenceCompatibilityIntegrationTest.java	74.359% <0.000%> (-19.189%)	⬇️
...ls/reference/CompareReferencesIntegrationTest.java	61.111% <0.000%> (-16.354%)	⬇️
...roadinstitute/hellbender/tools/LocalAssembler.java	67.425% <0.000%> (+0.073%)	⬆️
...roadinstitute/hellbender/utils/read/ReadUtils.java	82.278% <0.000%> (+0.316%)	⬆️
...stitute/hellbender/cmdline/CommandLineProgram.java	84.516% <0.000%> (+0.645%)	⬆️
...lyBasedSVDiscoveryTestDataProviderForSimpleSV.java	100.000% <0.000%> (+0.894%)	⬆️
.../main/java/org/broadinstitute/hellbender/Main.java	72.685% <0.000%> (+1.389%)	⬆️
...llbender/engine/filters/SoftClippedReadFilter.java	94.286% <0.000%> (+2.857%)	⬆️
.../hellbender/utils/python/PythonUnitTestRunner.java	78.689% <0.000%> (+3.279%)	⬆️
... and 588 more

[droazen]

👍 Looks good @orlicohen -- merge once tests pass