structural variant database software

Generate Panel of Normals, models or other similar references from lots of samples

Test data to be used for automated testing with the nf-core pipelines

Conda recipes for the bioconda channel.

Convert VCF with structural variations to CytoSure format

Repository to host tool-specific module files for the Nextflow DSL2 community!

Convert RNA fusion files to SV VCF

Call and score variants from WGS/WES of rare disease patients.

TIDDIT - structural variant calling

Config files used to define parameters specific to compute environments at different Institutions

A tool for computing ASE P values based on ASEReadCounter output files

mtDNA deletion and depletion signatures from wgs data

Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders

Mutation Identification Pipeline. Read the latest documentation:

Differential expression analysis using DEseq2 and Salmon

Keep track of and manage analyses

Python package with helper tools for the nf-core community.

RNA sequencing analysis pipeline using STAR or HISAT2, with gene counts and quality control

Analysis pipeline for small-RNA sequencing data.

VWorks protocols and other files for the Agilent NGS Workstations at the Genomics facility at SciLifeLab.

Repository for the workshop "Best practices on development"

Python Koans - Learn Python through TDD