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Starred repositories

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Terraform infrastructure for nf-core hackathon virtual events

Shell 2 1 Updated Mar 10, 2026

Assemble Hepatitis C virus genomes from Illumina enrichment sequencing

Nextflow 2 Updated Mar 9, 2026

💖🧸 Self hosted, you-owned Grok Companion, a container of souls of waifu, cyber livings to bring them into our worlds, wishing to achieve Neuro-sama's altitude. Capable of realtime voice chat, Minec…

TypeScript 32,988 3,246 Updated Mar 12, 2026
Groovy 3 Updated Mar 5, 2026

Metro-map-style SVG diagrams from Mermaid graph definitions, designed for visualizing bioinformatics pipeline workflows

Python 46 2 Updated Mar 6, 2026

Track Nextflow strict syntax linting health across nf-core pipelines

Python 7 3 Updated Mar 12, 2026

Python script to dynamically generate the bioinfo production checklists for QC, Delivery and Close of NGI sequencing projects

Python 2 2 Updated Feb 17, 2026

Python script to dynamically generate the bioinfo production checklists for QC, Delivery and Close of NGI sequencing projects

Python 1 1 Updated Feb 17, 2026

get things from one computer to another, safely

Python 22,411 725 Updated Mar 12, 2026

Download VEP cache for annotation-cache

Nextflow 4 2 Updated Mar 5, 2026

Download SnpEff cache for annotation-cache

Nextflow 1 Updated Jan 9, 2026

A free, open-source app store for GitHub releases — browse, discover, and install apps with one click. Powered by Kotlin and Compose Multiplatform for Android & Desktop (Linux, MacOS, Windows).

Kotlin 7,996 305 Updated Mar 12, 2026

:octocat: Browser extension that simplifies the GitHub interface and adds useful features

TypeScript 30,679 1,689 Updated Mar 12, 2026

The command line interface for access to the Data Delivery System primarily developed by the SciLifeLab Data Centre.

Python 12 13 Updated Mar 12, 2026

MultiQC plugin replicating the most used plots and tables from Illumina's SAV

Python 10 2 Updated Dec 18, 2025

Web tool to assess FAIR principles and promote their implementation

Jupyter Notebook 27 8 Updated Mar 10, 2026

A quality control analysis tool for high throughput sequencing data

Java 586 113 Updated Jan 5, 2026

MultiQC plugin for the National Genomics Infrastructure in Stockholm, Sweden.

Python 4 11 Updated Jan 8, 2026

Analysis pipeline for the functional annotation and translation of somatic SNVs/InDels and copy number abberations for precision cancer medicine.

Nextflow 12 9 Updated Mar 12, 2026

ClairS-TO - a deep-learning method for tumor-only somatic variant calling

Python 82 4 Updated Nov 13, 2025

A CLI code-typing game that turns your source code into typing challenges

Rust 1,014 27 Updated Mar 12, 2026

Beautiful, Modern & Opinionated Linux

Shell 21,123 2,094 Updated Mar 12, 2026
Python 953 83 Updated Feb 24, 2026

Influenza genome analysis Nextflow workflow

Nextflow 24 14 Updated Mar 10, 2026

Efficient merging of structural variants from multiple SV callers and samples

Python 33 2 Updated Feb 27, 2026

A focused launcher for your desktop — native, fast, extensible

C++ 6,753 166 Updated Mar 12, 2026
Nextflow 2 1 Updated Sep 11, 2025

Chrome and Firefox extension for Conventional Comments in GitHub UI.

JavaScript 120 14 Updated Jan 7, 2026

Self-hosted GitHub Actions runners made simple. For AWS. 10x cheaper, 40% faster, and unlimited caching. Best alternative to Actions Runner Controller.

Shell 1,147 42 Updated Mar 10, 2026

Use various fgbio functions and classes in your Nextflow scope.

Groovy 5 Updated Feb 12, 2026
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