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prefetch incorrectly trying to download cart file

Status: Open.

#1157 In ncbi/sra-tools;

· MikeWLloyd opened on Mar 5, 2026

fasterq-dump incomplete download

Status: Open.

#1154 In ncbi/sra-tools;

· ManuelBradicic42 opened on Feb 27, 2026

fastq-dump quit with error code 3

Status: Open.

#1149 In ncbi/sra-tools;

· mrgbioinformatica-star opened on Feb 11, 2026

sam-dump segfaults in sra-tools 3.3.0

Status: Open.

#1144 In ncbi/sra-tools;

· fplazaonate opened on Jan 28, 2026

Compilation error due to missing file

Status: Open.

#1122 In ncbi/sra-tools;

· rennigm opened on Dec 4, 2025

Best practices for batch processing SRA accessions on an HPC cluster

Status: Open.

#1113 In ncbi/sra-tools;

· Tushar-bioinfo opened on Nov 1, 2025

fasterq-dump error code 3 associated with directory name

Status: Open.

#1110 In ncbi/sra-tools;

· NateyJay opened on Oct 22, 2025

How are temporary files handled when running multiple prefetch jobs in same directory

Status: Open.

#1107 In ncbi/sra-tools;

· t-vane opened on Oct 9, 2025

Does latf-load not support single-cell RNA-seq data, including index files?

Status: Open.

#1048 In ncbi/sra-tools;

· chunryongoh opened on May 12, 2025

/etc/profile.d/sra-tools.csh broken

Status: Open.

#1011 In ncbi/sra-tools;

· outpaddling opened on Feb 14, 2025

Feature suggestion: option in fasterq-dump to output the FASTQ files already gzipped

Status: Open.

#956 In ncbi/sra-tools;

· fantauzzi opened on Aug 14, 2024

vdb-config: use AWS IAM role instead of credentials file

Status: Open.

#945 In ncbi/sra-tools;

· peter-sandor-1992 opened on Jul 4, 2024