AI agents running research on single-GPU nanochat training automatically

A library for efficient similarity search and clustering of dense vectors.

BPfold: Deep generalizable prediction of RNA secondary structure via base pair motif energy.

Differentiable RNA folding in JAX

A fast and accurate RNA secondary structure, end-to-end approach prediction method.

RNA Structural Covariation Above Phylogenetic Expectation

RiboNucleic Acid (RNA) Language Model

Evaluate OMR sheets fast and accurately using a scanner 🖨 or your phone 🤳.

Cell2Sentence: Teaching Large Language Models the Language of Biology

Explore genomes in the terminal. Light, blazing fast 🚀, vim-motion.

Lightpanda: the headless browser designed for AI and automation

A plugin that will automatically download PDFs of zotero items from sci-hub

The batteries-included full-stack framework for the AI era. Develop JS/TS web apps (React, Node.js, and Prisma) using declarative code that abstracts away complex full-stack features like auth, bac…

[NeurIPS 2024] BEACON: Benchmark for Comprehensive RNA Tasks and Language Models

Public repository for ShapeMapper 2 releases

The open source AI engineering platform. MLflow enables teams of all sizes to debug, evaluate, monitor, and optimize production-quality AI agents, LLM applications, and ML models while controlling …

Siamese Neural Network Architecture for Graph Alignment

Experimental features for Nextflow

A single cell transcriptomics pipeline for QC, integration and making the data presentable

Single-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-droplet detection

Gene regulatory network containing signed transcription factor-target gene interactions

A Kotlin DSL to create and plot RNA 2D structures. The drawing engine behind RNArtist to be used from the command line.

Evolcust retrieves groups of genes that appear clustered together in groups of species

Scripts to download genomes from the NCBI FTP servers

genome_updater is a bash script that downloads and updates (non-redundant) snapshots of the NCBI Genomes repository (RefSeq/GenBank) with advanced filters, detailed logs and reports, file integrity…

A user-friendly workflow for phylogenomics