A Co-evolving Agentic AI System for Medical Imaging Analysis

Collaborative Machine-Learning-Centric Data Analytics Using Workflows

LLM-powered framework for deep document understanding, semantic retrieval, and context-aware answers using RAG paradigm.

A framework for building evolvable, distributed, and general-purpose multi-agent system.

a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challenge of accurately segmenting individual cells in complex ima…

Image registration (alignment) software for large microscopy images

Deep learning based spot detection for FISH images.

Lets make video diffusion practical!

GPU accelerated post-processing for 2D or 3D imaging spatial transcriptomics data.

OS-ATLAS: A Foundation Action Model For Generalist GUI Agents

Read and write Neuroglancer datasets programmatically.

BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics analysis.

BANKSY: spatial clustering

A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification

Visual Studio Code

Get up and running with Kimi-K2.5, GLM-5, MiniMax, DeepSeek, gpt-oss, Qwen, Gemma and other models.

Module for embedding igv.js in an IPython notebook

peakHiC method to identify 3D chromatin interactions (loops) from HiC data

Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation

Python project containing Ice remoting code for OMERO

Static plotting for spatialdata

Multi-Omics Factor Analysis

🧡 Folo is the AI Reader

A nextflow pipeline which integrates multiple omic data streams and performs coordinated analysis

An nf-core (meta) pipeline for analysis of different members of Mycobacterium tuberculosis complex.