Search Results for "brownian dynamics"

Inspired by the well-known microscopic models of Brownian particles and social-force model, this project presents a force-based method to characterize social groups and opinion exchange in collective behavior of many individual units. The problem is complex because opinions and actions are described as different features for each individual, and opinions interact and shape action with a time delay. The social topology among individuals is described by a set of matrices, which provide...

The oxDNA code has been moved to https://github.com/lorenzo-rovigatti/oxDNA, please go there for new releases.

PDP-OmniSim 🧬 Scientific Overview PDP-OmniSim is an advanced computational framework for simulating parallel and distributed processing systems, with cutting-edge applications in computational neuroscience, distributed computing, and complex systems modeling. The framework provides researchers with robust tools for large-scale simulations of networked systems and their emergent behaviors. 🎯 Key Scientific Contributions 🔬 Interdisciplinary Research Domains Computational...

Based on source code of SANDER from AMBER10, Cheung group (https://mynsm.uh.edu/wiki/projects/cheunggroup/) from University of Houston has been continuously making efforts for molecular simulations of coarse-grained protein models. The code is now released for promoting research in protein-protein association simulations. The code includes additional Hamiltonian terms for the coarse-grained model (as described in http://www.pnas.org/content/110/51/20545.abstract) and uses the algorithm...