Open Source Java Scientific/Engineering Software

OpenMRS is a community-developed, open source, enterprise electronic medical record system. Our mission is to improve health care delivery in resource-constrained environments by coordinating a global community to creates and support this software.

OpenClinic GA is an open source integrated hospital information management system covering management of administrative, financial, clinical, lab, x-ray, pharmacy, meals distribution and other data. Extensive statistical and reporting capabilities.

FreeLIMS is a Laboratory Information Management System ( LIMS ). Manage samples; create sample types from methods & parameters; easily generate reports & certificates; fine tune user rights. FreeLIMS is Open Source and Free.

The Avalon Cheminformatics Toolkit contains tools to render and canonicalize SMILES and manipulate MOL file and related formats as well as structure fingerprinting.

Request new Lab Inventory feature or module and receive a free Single User version with new feature. Help us to improve Lab Inventory. We want to hear your feedback! https://www.atgclabs.com/products/li The Lab Inventory System is an innovative, easy to learn solution for research laboratories. You can quickly and easily upload your existing Excel based inventory and get started in minutes, manage laboratory inventory, place orders and keep track of them in one place. Lab Inventory can provide you with the advanced functionality you require enabling you to regain control of your stuff. If you are experiencing problems using the Lab Inventory System then please report your problem to support@atgclabs.com If you want to get priority help, need to get up to speed quickly, require some training or need full production support, request customization to your unique work flows or new features, please contact sales@atgclabs.com Join us on www.linkedin.com/groups/Lab-Inventory

This project develops a web-based (JSP) Fuzzy Rule-Based Expert System for analyzing ECG (electro cardio gram) signals & diagnosing Tachi-Arrhythmias. Proj. main blocks: inference engine, knowledgebase, KB editor, explanation, and feature extraction.

Accent (Advanced Component Control Enhancing Network Technologies) is a comprehensive tool suite that interfaces a variety of communications systems and allows these systems to be controlled through goals (high-level user aims) and policies (lower-level system rules). Accent has been applied to the domains of: o Call Control: for telecommunications, particularly call control in Internet telephony o Home Care: for home automation and telecare, particularly for domestic appliances and devices to support home care o Sensor Networks: sensor networks, particularly managing wind farms However, the approach is generic and extensible for managing other kinds of systems. Accent is essentially software. As most of Accent in in Java, it needs at least a Java Runtime Environment but more likely a Java Software Development Kit. To interact with the real world, Accent needs relevant hardware such as a communications server (softswitch) or home automation equipment.

easyrec is a recommender system that aims for easy integration of recommendations into web applications. It has a web based admin tool, and its recommendation engine is accessible through a REST API, providing methods like 'other users also bought'

Help us to improve Cell Culture. We want to hear your feedback! Request new Cell Culture feature or module and receive a free Single User version with new feature. https://www.atgclabs.com/products/fw Cell Culture is a highly specialized protocol-driven system designed to support development of the cell lines. Cell Culture manages activities related to the growth and maintenance of cell lines, provides stable cell lines development and incorporates laboratory methods facilitating faster and more accurate inventory lifecycle management: from the procurement of cell lines and request processing to tracking of tubes and other items in the laboratories. Cell Culture provides easy to follow, step-by-step protocols, with tips and notes and is of interest to researchers, technicians and process engineers using cell culture within the biotechnology, biomedicine and pharmaceutical industries.

OmicBrowse, developed with Flash and Java, is a highly evaluated genome browser integrating omics knowledge ranging from genomes to phenomes and is especially appropriate for positional-cloning purposes.

Protein Data Bank transformed into an SQL database with a very powerful search engine and a rich web interface. The engine combines chemical, sequence and 3D structure searches. The interface provides statistics, sequence and 3D structure alignments.

The Virtual Math Teams (VMT) Project (vmt.mathforum.org) at the Math Forum enables K-12 math collaborative learning, professional development of educators, & group cognition research. VMT is now integrated with GeoGebra (http://www.geogebra.org/).

ArgooMap is an online, map-based discussion forum, which allows participants to reference their contributions to geographic locations. Different versions of ArguMap and ArgooMap/Argoomap were developed by students supervised by Dr. Claus Rinner at Ryerson University (Toronto, Canada) with partial funding from the GEOIDE Network of Centres of Excellence and DAAD, the German Academic Exchange Service. Past and current developers at Ryerson and the University of Muenster include: - Carsten Keßler - Marius Austerschulte - Sepehr Mavedati - Sami Munshi - Matrica Joshi Alternative versions (not yet available here) were developed by: - Aaron Sani (Ryerson) - Soheil Boroushaki (Univ. of Western Ontario) - Ana Simao (University College London) The ArgooMap Sourceforge project page contains two implementations of the package, which diverged from a single older version, ArguMap. The first known as 'Argoomap1' or 'ArgooMap_Rye' is PHP-based... (see readme1st for more).

Large set of functions for biological records (ECG, EEG, phono), datastore, datamining and analysis (HRV, QT, RR, ST). The application is written in Java, so that it is assumed to work on all devices. It runs as a desktop or client-server application. It

The Dataverse Network is a Java EE5 app that enables researchers to share data on-line. It provides data citation standards, facilitates preservation, distribution and replication of data, and includes statistical analysis. More at: http://thedata.org

Identifiers.org is a system providing resolvable and persistent identifiers, in the form of URIs, used to identify data for the scientific community, with a current focus on the Life Sciences domain. The provision of resolvable identifiers (URLs) fits well with the Semantic Web vision, and the Linked Data initiative. The resolving services of Identifiers.org rely on the information stored in the MIRIAM Registry.

LogiDist offer a solution of "Computer Aided Logistic" with mostly informative purposes on executed pickups/delivery of merchandise. Is able to manage the whole process of purchase, order management, merchandise delivery to reduce distribution costs.

The NVC Revision System is an online tool for preparing, submitting, reviewing and managing proposals for changes in the U.S. National Vegetation Classification (NVC).

Adaptive Work-Centered User Interface Technology (ACUITy) utilizes semantic technology in an ontology-based approach to modeling and implementing intelligent user interfaces.

Ascia User Interface is the human interface of Java Automation Integration System (or Just Another Integration Software), an event driver software that allow control of home automation appliance (light, motors, ecc).

Help us to improve Lab Processes. We want to hear your feedback! Request new Lab Processes feature or module and receive a free Single User version with new feature. https://www.atgclabs.com/products/lp The Animal Studies module is a comprehensive and straightforward application specially designed for biologists and chemists who need to conduct a wide variety of tests and experiments on animals. Animal Studies requires minimal computing skills. Genetic and physiological data can be entered either manually or automatically when automated genotyping and analytical phenotypic assays are used. Animal Studies application is web-based and completely customizable, with Animal Studies it is very simple to create, change and distribute data flows using an iterative approach. Animal Studies puts all the information right at your fingertips. If you are experiencing problems using the Animal Studies System then please report your problem to support@atgclabs.com

AutoMATRIX is a tool to predict key transcription factors in microarray experiments.

The BMF is a Software Framework developed in Java language for the creation of web applications on the server platform also Open source, in clinical, administrative and management for a healthcare company.

Biomedical Information Management System (BIMS) is a modular multilayer object - oriented software architecture, which provides a flexible computational solution to capture and manage a heterogeneous biomedical data: textual and visual information.