Compare the Top Government Payroll Software as of March 2026

What is Government Payroll Software?

Payroll software helps businesses automate the payment of salaries and wages to their employees. It is used to calculate and process payroll payments, manage employee information, and generate reports. It is a convenient and efficient way to ensure that employees are paid on time and accurately. Payroll software typically includes features for generating paychecks, direct deposit, tax filings, generating year-end tax forms (such as W-2s), and maintaining accurate payroll records. Additionally, many payroll software solutions integrate with time-tracking systems, HR management tools, and accounting software to simplify overall business operations and ensure accuracy in payroll processing. Compare and read user reviews of the best Government Payroll software currently available using the table below. This list is updated regularly.

  • 1
    EPAY HCM

    EPAY HCM

    EPAY Systems

    EPAY's Human Capital Management (HCM) software helps ease HR workloads so employees can focus on the company's core business. EPAY's full suite of HCM tools help make recruitment, onboarding, time and attendance tracking, and payroll and tax management easy for businesses of all sizes. With EPAY HCM, businesses can manage their workforce in less time and effort.
    Starting Price: $1.00/month/user
  • 2
    CheckMark Payroll
    Say hello to CheckMark Payroll, the stress-free way to manage all your payroll processes. Automate your payroll, save time so you can concentrate on growing your business. Pay your employees on time and accurately, increase employee morale and avoid costly penalties. Automate tedious tasks by integrating with popular accounting and timekeeping solutions and make the payroll process much simpler. We monitor and update our software regularly to ensure accuracy and compliance with the IRS. Constantly updated payroll software ensures accuracy and peace of mind. Pay your employees on time and accurately, increase employee morale and avoid costly penalties. Review your payroll, include any incomes and deductions and save each employee individually or all at once. Engineered for small businesses, CheckMark Payroll software for Macintosh and Windows is a comprehensive solution for small business owners, accountants, and payroll professionals.
    Starting Price: $429.00/one-time
  • 3
    EBS PaySuite

    EBS PaySuite

    Employee Based Systems

    EBS PaySuite is a cloud-based HRMS solution that manages Payroll, HR, Time & Labor Hiring & Onboarding for your company’s workforce. Managing all the tasks associated with employee data can be done more efficiently and effectively with PaySuite. Everything you need to manage your employees. Say goodbye to your old HR and Payroll Systems. Get a single database solution that helps your bottom line. EBS Reports helps end-users stay competitive by providing real-time analytics for everyone, everywhere. From a critical presentation in the boardroom to a quick check via cellphone, users can create and immediately view reports, without relying on IT. A successful implementation begins with a tried and true methodology. Effective project management is essential for the completion of a project. EBS offers several partnership opportunities.
  • 4
    Affinity Payroll

    Affinity Payroll

    Affinity Payroll

    For over thirty years, Affinity has been a trusted partner for mid-market and enterprise businesses in Australia and New Zealand, empowering them to transform their payroll operations. With a focus on turning payroll from a cost into an asset, we have established ourselves as industry leaders in delivering innovative cloud-based payroll software and exceptional payroll services. We know that running payroll can be a complex and time-consuming task. That's why we offer supported and fully managed payroll solutions designed to streamline your processes, increase compliance, and free up your internal resources.
  • 5
    CivilSoft

    CivilSoft

    CivilSoft

    Alleviate complexity, elevate compliance, reduce administrative burden, and ensure your people are rewarded fairly, equitably, and consistently in accordance with their value to your organization. Plan, model and execute organization structures that support your strategy. Breakdown your organization into entities, units, departments and cost centers in a way that reflects the real-life structure of your business. Display a position-based organization chart that enables you to visualize roles and reporting structures and get employee data that matters most, right at your fingertips. Keeping up with changes is as simple as a drag and drop tool to manage departments, reporting lines and decision hierarchies. Add, modify, and delegate positions to drive workflows and ensure a smooth flow of transactions.
    Starting Price: $15000.00/one-time
  • 6
    Criterion HCM

    Criterion HCM

    Criterion

    No need to compromise. Criterion’s “Simply Powerful” HCM software enables midmarket customers to modernize their HR, Payroll, Talent Engagement, and people processes. Human capital management requires scalability and an individual approach. So, we've built a powerful yet easy-to-use platform that will grow with your company. Create an HCM universe that is right for your business with open architecture, RESTful API and configurable workflows. Consolidate your people processes. Attract the top talent and measure performance - all in one place, based on a unified database. Boost engagement at every level. Involve every employee in your company with a solution that you and your people will love using. Make smarter data-driven decisions. Put the right data at your company’s fingertips and generate hundreds of essential reports. Easily find and onboard successful candidates and track employee performance.
    Starting Price: $2000.00/month
  • 7
    Sage Payroll
    Easily manage payroll operations with Sage Payroll, a cloud-based payroll solution. Sage Payroll enables users to pay their employees through different methods such as company-generated checks, paycards, or direct deposit. Sage Payroll can easily integrate with systems like Sage 100, Quickbooks, and Sage 50. Sage Payroll also enables users to monitor multiple reports for analysis
    Starting Price: $49.95/month
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