Download MendeleyDNA-directed assembly of diffraction-quality protein crystals
Han, Z., Mirkin, C.A.To be published.
9N33 | pdb_00009n33
Glutarate L-2-hydroxylase N187C mutant-5'-Mal-C6-AGCT DNA conjugate
- PDB DOI: https://doi.org/10.2210/pdb9N33/pdb
- Classification: METAL BINDING PROTEIN
- Organism(s): Escherichia coli
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2025-01-29 Released: 2026-02-04
- Funding Organization(s): National Science Foundation (NSF, United States), Other government
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.61 Å
- R-Value Free: 0.240 (Depositor), 0.244 (DCC)
- R-Value Work: 0.196 (Depositor), 0.200 (DCC)
Starting Model: experimental
View more details
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Glutarate 2-hydroxylase | 324 | Escherichia coli | Mutation(s): 1 Gene Names: glaH, EcolC_1047 EC: 1.14.11.64 |  | |
UniProt | |||||
Find proteins for B1IVJ9 (Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)) Explore B1IVJ9 Go to UniProtKB: B1IVJ9 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | B1IVJ9 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| A1BVO (Subject of Investigation/LOI) Query on A1BVO | C [auth A], E [auth B], F [auth B] | (1r,4r)-4-[(2,5-dioxopyrrolidin-1-yl)methyl]cyclohexane-1-carboxamide C12 H18 N2 O3 NILRGZBNWXQVHW-KYZUINATSA-N |  | ||
| FE2 (Subject of Investigation/LOI) Query on FE2 | D [auth A], G [auth B] | FE (II) ION Fe CWYNVVGOOAEACU-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.61 Å
- R-Value Free: 0.240 (Depositor), 0.244 (DCC)
- R-Value Work: 0.196 (Depositor), 0.200 (DCC)
Space Group: P 4 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 124.937 | α = 90 |
| b = 124.937 | β = 90 |
| c = 127.288 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| XDS | data reduction |
| Aimless | data scaling |
| PHASER | phasing |
| Coot | model building |
Entry History & Funding Information
Deposition Data
- Released Date: 2026-02-04 Deposition Author(s): Han, Z., Mirkin, C.A.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Science Foundation (NSF, United States) | United States | DMR-2428112 |
| Other government | United States | Air Force Office of Scientific Research FA9550-22-1-0300 |
Revision History (Full details and data files)
- Version 1.0: 2026-02-04
Type: Initial release
